iSEE-pkg-package | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
annotateEnsembl | Annotation via ENSEMBL database |
annotateEntrez | Annotation via Entrez database |
assay-method | ExperimentColorMap class |
assayColorMap | ExperimentColorMap class |
assayColorMap-method | ExperimentColorMap class |
assayColorMap<- | ExperimentColorMap class |
assayColorMap<--method | ExperimentColorMap class |
assayNames-method | ExperimentColorMap class |
assayNames<--method | ExperimentColorMap class |
assays-method | ExperimentColorMap class |
assays<--method | ExperimentColorMap class |
class:ExperimentColorMap | ExperimentColorMap class |
colData-method | ExperimentColorMap class |
colData<--method | ExperimentColorMap class |
colDataColorMap | ExperimentColorMap class |
colDataColorMap-method | ExperimentColorMap class |
colDataColorMap<- | ExperimentColorMap class |
colDataColorMap<--method | ExperimentColorMap class |
colDataPlotDefaults | Parameter defaults |
defaults | Parameter defaults |
ExperimentColorMap | ExperimentColorMap class |
ExperimentColorMap-class | ExperimentColorMap class |
featAssayPlotDefaults | Parameter defaults |
heatMapPlotDefaults | Parameter defaults |
isColorMapCompatible | Check compatibility between ExperimentColorMap and SummarizedExperiment objects |
iSEE | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
iSEE-pkg | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
modeGating | App pre-configured to link multiple feature assay plots |
redDimPlotDefaults | Parameter defaults |
rowData-method | ExperimentColorMap class |
rowData<--method | ExperimentColorMap class |
rowDataColorMap | ExperimentColorMap class |
rowDataColorMap-method | ExperimentColorMap class |
rowDataColorMap<- | ExperimentColorMap class |
rowDataColorMap<--method | ExperimentColorMap class |
rowDataPlotDefaults | Parameter defaults |
rowStatTableDefaults | Parameter defaults |
subsetPointsByGrid | Subset points for faster plotting |
synchronizeAssays | Synchronize assay colormaps to match those in a SummarizedExperiment |