%+%-method | replace current cytometry data |
+-method | overloaded '+' method for ggcyto.gs |
+-method | overloaded '+' method for ggcyto |
+-method | overloaded '+' method for ggcyto_gate_layout |
+.ggcyto_flowSet | overloaded '+' method for ggcyto |
+.ggcyto_GatingLayout | overloaded '+' method for ggcyto_gate_layout |
+.ggcyto_GatingSet | overloaded '+' method for ggcyto.gs |
as.ggplot | It fortifies the data, fills some default settings and returns a regular ggplot object. |
autoplot | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.flowFrame | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.flowSet | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.GatingHierarchy | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.GatingSet | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.GatingSetList | Plot cytometry data in one or two dimension with the ggcyto package. |
autoplot.ncdfFlowList | Plot cytometry data in one or two dimension with the ggcyto package. |
axis_x_inverse_trans | Display ggcyto axis labels using their raw values (as stored in the data structure) |
axis_y_inverse_trans | Display ggcyto axis labels using their raw values (as stored in the data structure) |
compute_stats | compute the statistics of the cell population defined by gates |
flowCore_asinht_trans | Inverse hyperbolic sine transformation(flowCore version). |
fortify | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.ellipsoidGate | Convert a ellipsoidGate to a data.table useful for ggplot |
fortify.filterList | Convert a filterList to a data.table useful for ggplot |
fortify.flowFrame | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.flowSet | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.GatingSet | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.GatingSetList | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.ncdfFlowList | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table |
fortify.polygonGate | Convert a polygonGate to a data.table useful for ggplot |
fortify.rectangleGate | Convert a rectangleGate to a data.table useful for ggplot |
fortify_fs | Fortify a model into flowSet object |
fortify_fs.default | Fortify a model into flowSet object |
fortify_fs.flowFrame | Fortify a model into flowSet object |
fortify_fs.flowSet | Fortify a model into flowSet object |
fortify_fs.GatingSet | Fortify a model into flowSet object |
fortify_fs.GatingSetList | Fortify a model into flowSet object |
geom_gate | Add a gate layer to a ggcyto plot. |
geom_gate.character | Add a gate layer to a ggcyto plot. |
geom_gate.default | Add a gate layer to a ggcyto plot. |
geom_gate.filter | Add a gate layer to a ggcyto plot. |
geom_gate.filterList | Add a gate layer to a ggcyto plot. |
geom_gate.filters | Add a gate layer to a ggcyto plot. |
geom_gate.filtersList | Add a gate layer to a ggcyto plot. |
geom_gate.list | Add a gate layer to a ggcyto plot. |
geom_gate.logical | Add a gate layer to a ggcyto plot. |
geom_gate.logicalFilterResult | Add a gate layer to a ggcyto plot. |
geom_gate.quadGate | Add a gate layer to a ggcyto plot. |
geom_hvline | Vertical or horizontal line. |
geom_overlay | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_overlay.character | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_overlay.default | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_overlay.flowFrame | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_overlay.flowSet | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_overlay.ncdfFlowList | Overlay a population on an existing ggcyto plot analogous to backgating. |
geom_stats | Add a popluation statistics layer to a ggcyto plot. |
getFlowFrame | extract flowFrame data structure from the given R object |
getFlowFrame.flowSet | extract flowFrame data structure from the given R object |
getFlowFrame.GatingHierarchy | extract flowFrame data structure from the given R object |
getFlowFrame.GatingSet | extract flowFrame data structure from the given R object |
getFlowFrame.GatingSetList | extract flowFrame data structure from the given R object |
getFlowFrame.ncdfFlowList | extract flowFrame data structure from the given R object |
ggcyto.flowSet | Create a new ggcyto plot from a flowSet |
ggcyto.GatingHierarchy | Create a new ggcyto plot from a GatingSet |
ggcyto.GatingSet | Create a new ggcyto plot from a GatingSet |
ggcyto.GatingSetList | Create a new ggcyto plot from a GatingSet |
ggcyto.ncdfFlowList | Create a new ggcyto plot from a flowSet |
ggcyto_arrange | Arrange a list of ggplot objects into gtable |
ggcyto_par_default | Return The default ggcyto settings |
ggcyto_par_set | Set some default parameters for ggcyto |
is.ggcyto | Reports whether x is a ggcyto object |
is.ggcyto_flowSet | Reports whether x is a ggcyto_flowSet object |
is.ggcyto_par | Reports whether x is a ggcyto_par object |
labs_cyto | Change axis labels and legend titles |
marginalFilter | Generate a marginal gate. |
merge.quad.gates | extend the original flowWorkspace:::.mergeGates function to restore quadGate when applicable |
plot.ggcyto | Draw ggcyto on current graphics device. |
print-method | Draw ggcyto on current graphics device. |
print.ggcyto | Draw ggcyto on current graphics device. |
print.ggcyto_GatingLayout | print method for ggcyto_gate_layout class |
scale_x_flowCore_fasinh | Add a flowCore inverse hyperbolic sine scale to the x or y axes of a ggcyto plot. |
scale_x_flowJo_biexp | Add a flowJo biexponential scale to the x or y axes of a ggcyto plot. |
scale_x_flowJo_fasinh | Add a flowJo inverse hyperbolic sine scale to the x or y axes of a ggcyto plot. |
scale_x_logicle | Add a logicle scale to the x or y axes of a ggcyto plot. |
scale_y_flowCore_fasinh | Add a flowCore inverse hyperbolic sine scale to the x or y axes of a ggcyto plot. |
scale_y_flowJo_biexp | Add a flowJo biexponential scale to the x or y axes of a ggcyto plot. |
scale_y_flowJo_fasinh | Add a flowJo inverse hyperbolic sine scale to the x or y axes of a ggcyto plot. |
scale_y_logicle | Add a logicle scale to the x or y axes of a ggcyto plot. |
show-method | Draw ggcyto on current graphics device. |
show-method | print method for ggcyto_gate_layout class |
show.ggcyto | Draw ggcyto on current graphics device. |
show.ggcyto_GatingLayout | print method for ggcyto_gate_layout class |
stat_position | Compute the positions of the population statistics based on the geometic gate centroid for a ggcyto plot. |
stat_position.filter | Compute the positions of the population statistics based on the geometic gate centroid for a ggcyto plot. |
stat_position.filterList | Compute the positions of the population statistics based on the geometic gate centroid for a ggcyto plot. |
stat_position.list | Compute the positions of the population statistics based on the geometic gate centroid for a ggcyto plot. |
transform-method | transform methods for gates |
transform_gate | transform methods for gates |
transform_gate.ellipsoidGate | transform methods for gates |
transform_gate.polygonGate | transform methods for gates |
transform_gate.quadGate | transform methods for gates |
transform_gate.rectangleGate | transform methods for gates |