Analysis of amplicon enrichment panels


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Documentation for package ‘ampliQueso’ version 1.18.0

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camelSampleTable ampliQueso sample data
camelTest camelTest - calculating permutation tests for camel measures (sequential and parallel versions)
compareCoverages compareCoverages - camel measure for a single comparison.
compareCoveragesReg compareCoveragesReg - calculating given camel measures for a list of regions specified by a BED file (sequential and parallel versions)
getCountTable getCountTable - obtaining typical count table.
getSNP getSNP - finding SNPs in all samples for regions specified by a BED file all regions if BED file not provided (sequential and parallel versions)
ndMax ampliQueso sample data
ndMin ampliQueso sample data
runAQReport runAQReport - runing the AmpliQueso report