DELTA |
Contains the delta variations of support, confidence and lift. |
distribViz |
Visualizes with boxplots the Importance Index distribution of a set of transcription factors. |
heatI |
Generates an heatmap visualization of the mean Importance Index of pairs of transcription factors. |
IComp |
Computes the Importance Index of a transcription factor in a set of association rules. |
IMP |
Contains the mean Importance Index of each co-regulator. |
imp_FOSL2 |
Contains the set of Importance Indexes of FOSL2 in a given set of rules. |
IMP_Z |
Contains the Importance Index associated with each co-regulator which is present in at least one association rule. |
IPCA |
Principal Components Analysis for distributions of variations of support and confidence obtained removing a transcription factor from a set of rules. |
items |
Extracts items in the left-hand-side of an association rule. |
itemset |
Builds the itemset in the left-hand-side of an association rule. |
I_c_2 |
Contains the mean Importance Index of pairs of transcription factors which are present in at least one association rule. |
MCF7_chr1 |
Contains genomic regions in the first chromosome of the MCF-7 human breast adenocarcinoma cell line at the ranges side, and the presence indexes of transcription factors in such regions at the metadata side. |
presAbs |
Splits a set of transcription factors in 'present' or 'absent' transcription factors in a set of rules. |
p_TFs |
Contains co-regulators found in at least one association rule. |
rulesGen |
Exctracts relevant association rules. |
rulesTF |
Extracts a subset of rules that contain a certain transcription factor (or a combination of transcription factors) in their left-hand-side. |
rulesTF0 |
Substitutes the presence of a transcription factor (or a combination of transcription factors) in the left-hand-side of a set of rules, with its absence. |
r_FOSL2 |
Represents an example of rulesTF output, i.e. the subset of rules whose left-hand-sides contain FOSL2, and the correspondent quality measures. |
r_noFOSL2 |
Represents an example of rulesTF0 output, where the presence of FOSL2 was replaced with its absence. |
r_TEAD4 |
Contains the association rules for the prediction of the presence of the transcription factor TEAD4 in the considered genomic regions, i.e., with TEAD4 in the right-hand-side of the association rules. |
search_rule |
Finds an association rule in a dataset. |
TF_Imp |
Contains the candidate co-regulators and the number of rules associated with them. |