A C D E F G H I L M N O P R S T U
RCy3-package | RCy3: Functions to Access and Control Cytoscape |
addCyEdge | DEFUNCT: addCyEdge |
addCyEdgedefunct | DEFUNCT: addCyEdge |
addCyEdges | Add CyEdges |
addCyNode | DEFUNCT: addCyNode |
addCyNodedefunct | DEFUNCT: addCyNode |
addCyNodes | Add CyNodes |
addGraphToGraph | DEFUNCT: addGraphToGraph |
addGraphToGraphdefunct | DEFUNCT: addGraphToGraph |
AddToGroup | Add to Group |
clearEdgePropertyBypass | Clear Edge Property Bypass |
clearNetworkCenterBypass | Clear Network Center Bypass |
clearNetworkPropertyBypass | Clear Network Property Bypass |
clearNetworkZoomBypass | Clear Network Zoom Bypass |
clearNodeOpacityBypass | Clear Node Opacity Bypass |
clearNodePropertyBypass | Clear Node Property Bypass |
clearSelection | Clear Selection |
cloneNetwork | Clone a Cytoscape Network |
closeSession | Close Session |
collapseGroup | Collapse Group |
commandEcho | Command Echo |
commandOpenDialog | Command Open Dialog |
commandPause | Command Pause |
commandQuit | Command Quit |
commandRunFile | Command Run File |
commandsAPI | Open Swagger docs for CyREST Commands API |
commandsGET | Commands GET |
commandsHelp | Commands Help |
commandSleep | Command Sleep |
commandsPOST | Commands POST |
commandsRun | Run a Command |
connectToNewestCyWindow | DEFUNCT: connectToNewestCyWindow |
connectToNewestCyWindowdefunct | DEFUNCT: connectToNewestCyWindow |
copyCytoscapeNetwork | DEPRECATED: copyCytoscapeNetwork |
copyCytoscapeNetworkdeprecated | DEPRECATED: copyCytoscapeNetwork |
copyVisualStyle | Copy Visual Style |
createGraphFromNetwork | createGraphFromNetwork |
createGroup | Create Group |
createIgraphFromNetwork | Create an igraph network from a Cytoscape network |
createNetworkFromDataFrames | Create a network from data frames |
createNetworkFromGraph | Create Network From Graph |
createNetworkFromIgraph | Create a Cytoscape network from an igraph network |
createSubnetwork | Create subnetwork from existing network |
createVisualStyle | Create a visual style from components |
createWindow | DEPRECATED: createWindow |
createWindowdeprecated | DEPRECATED: createWindow |
createWindowFromSelection | DEPRECATED: createWindowFromSelection |
createWindowFromSelectiondeprecated | DEPRECATED: createWindowFromSelection |
cy2.edge.names | DEFUNCT: cy2.edge.names |
cy2.edge.namesdefunct | DEFUNCT: cy2.edge.names |
cybrowserClose | Cybrowser Close |
cybrowserDialog | Cybrowser Dialog |
cybrowserHide | Cybrowser Hide |
cybrowserList | Cybrowser List |
cybrowserSend | Cybrowser Send |
cybrowserShow | Cybrowser Show |
cybrowserVersion | Cybrowser Version |
cyPlot | DEFUNCT: cyPlot |
cyPlotdefunct | DEFUNCT: cyPlot |
cyrestAPI | Open Swagger docs for CyREST API |
cyrestDELETE | CyREST DELETE |
cyrestGET | CyREST GET |
cyrestPOST | CyREST POST |
cyrestPUT | CyREST PUT |
cytoscapeApiVersions | Available CyREST API Versions |
CytoscapeConnection | DEPRECATED: CytoscapeConnection |
CytoscapeConnectiondeprecated | DEPRECATED: CytoscapeConnection |
cytoscapeFreeMemory | Free Up Unused Memory for Cytoscape |
cytoscapeMemoryStatus | Memory Available to Cytoscape |
cytoscapeNumberOfCores | Number of Processors Available to Cytoscape |
cytoscapePing | Ping Cytoscape |
cytoscapeVersionInfo | Cytoscape and CyREST API Versions |
CytoscapeWindow | DEPRECATED: CytoscapeWindow |
CytoscapeWindowdeprecated | DEPRECATED: CytoscapeWindow |
deleteAllNetworks | Delete All Networks |
deleteAllWindows | DEPRECATED: deleteAllWindows |
deleteAllWindowsdeprecated | DEPRECATED: deleteAllWindows |
deleteEdgeAttribute | DEPRECATED: deleteEdgeAttribute |
deleteEdgeAttribute_deprecated | DEPRECATED: deleteEdgeAttribute |
deleteGroup | Delete (or Ungroup) a Group |
deleteNetwork | Delete Network |
deleteNodeAttribute | DEPRECATED: deleteNodeAttribute |
deleteNodeAttribute_deprecated | DEPRECATED: deleteNodeAttribute |
deleteSelectedEdges | Delete Selected Edges |
deleteSelectedNodes | Delete Selected Nodes |
deleteTableColumn | Delete a table column |
deleteWindow | DEPRECATED: deleteWindow |
deleteWindowdeprecated | DEPRECATED: deleteWindow |
demoSimpleGraph | DEFUNCT: demoSimpleGraph |
demoSimpleGraphdefunct | DEFUNCT: demoSimpleGraph |
diffusionAdvanced | Diffusion Advanced |
diffusionBasic | Diffusion Basic |
disableApp | Disable App |
displayGraph | DEFUNCT: displayGraph |
displayGraphdefunct | DEFUNCT: displayGraph |
dockPanel | Dock Panel |
eda | DEFUNCT: eda |
eda.names | DEFUNCT: eda.names |
eda.namesdefunct | DEFUNCT: eda.names |
edadefunct | DEFUNCT: eda |
enableApp | Enable App |
existing.CytoscapeWindow | DEPRECATED: existing.CytoscapeWindow |
existing.CytoscapeWindowdeprecated | DEPRECATED: existing.CytoscapeWindow |
expandGroup | Expand Group |
exportImage | Export Image |
exportNetwork | Export Network |
exportNetworkToNDEx | Export Network To NDEx |
exportVisualStyles | Export Visual Styles |
fitContent | Fit Content |
fitSelectedContent | DEPRECATED: fitSelectedContent |
fitSelectedContent_deprecated | DEPRECATED: fitSelectedContent |
floatPanel | Float Panel |
getAdjacentEdgeNames | DEFUNCT: getAdjacentEdgeNames |
getAdjacentEdgeNamesdefunct | DEFUNCT: getAdjacentEdgeNames |
getAllEdgeAttributes | DEPRECATED: getAllEdgeAttributes |
getAllEdgeAttributes_deprecated | DEPRECATED: getAllEdgeAttributes |
getAllEdges | Get All Edges |
getAllNodeAttributes | DEPRECATED: getAllNodeAttributes |
getAllNodeAttributes_deprecated | DEPRECATED: getAllNodeAttributes |
getAllNodes | Get All Nodes |
getAppInformation | Get App Information |
getAppStatus | App Status |
getAppUpdates | List Apps With Updates |
getArrowShapes | Get Arrow Shapes |
getAttributeClassNames | DEFUNCT: getAttributeClassNames |
getAttributeClassNamesdefunct | DEFUNCT: getAttributeClassNames |
getAvailableApps | List Available Apps |
getBackgroundColorDefault | Get Background Color Default |
getCenter | DEPRECATED: getCenter |
getCenterdeprecated | DEPRECATED: getCenter |
getCollectionList | Get Collection List |
getCollectionName | Get Collection Name |
getCollectionNetworks | Get Collection Networks |
getCollectionSuid | Get Collection Suid |
getCommandNames | DEPRECATED: getCommandNames |
getCommandNamesWithinNamespace | DEPRECATED: getCommandNamesWithinNamespace |
getCommandNamesWithinNamespace_deprecated | DEPRECATED: getCommandNamesWithinNamespace |
getCommandNames_deprecated | DEPRECATED: getCommandNames |
getDefaultEdgeReverseSelectionColor | DEFUNCT: getDefaultEdgeReverseSelectionColor |
getDefaultEdgeReverseSelectionColordefunct | DEFUNCT: getDefaultEdgeReverseSelectionColor |
getDefaultNodeReverseSelectionColor | DEFUNCT: getDefaultNodeReverseSelectionColor |
getDefaultNodeReverseSelectionColordefunct | DEFUNCT: getDefaultNodeReverseSelectionColor |
getDirectlyModifiableVisualProperties | DEPRECATED: getDirectlyModifiableVisualProperties |
getDirectlyModifiableVisualPropertiesdeprecated | DEPRECATED: getDirectlyModifiableVisualProperties |
getDisabledApps | List Disabled Apps |
getEdgeAttribute | DEPRECATED: getEdgeAttribute |
getEdgeAttributeNames | DEPRECATED: getEdgeAttributeNames |
getEdgeAttributeNames_deprecated | DEPRECATED: getEdgeAttributeNames |
getEdgeAttribute_deprecated | DEPRECATED: getEdgeAttribute |
getEdgeColor | Get Edge Color |
getEdgeCount | Get Edge Count |
getEdgeLineStyle | Get Edge Line Style |
getEdgeLineWidth | Get Edge Line Width |
getEdgeProperty | Get Edge Property Values |
getEdgeSelectionColorDefault | Get Edge Selection Color Default |
getEdgeTargetArrowShape | Get Edge Target Arrow Shape |
getFirstNeighbors | Get list of nodes neighboring provided list |
getGraph | DEFUNCT: getGraph |
getGraphdefunct | DEFUNCT: getGraph |
getGraphFromCyWindow | DEPRECATED: getGraphFromCyWindow |
getGraphFromCyWindowdeprecated | DEPRECATED: getGraphFromCyWindow |
getGroupInfo | Get Group Information |
getInstalledApps | List Installed Apps |
getLayoutNameMapping | Get Layout Name Mapping |
getLayoutNames | Get Layout Names |
getLayoutPropertyNames | Get Layout Property Names |
getLayoutPropertyType | Get Layout Property Type |
getLayoutPropertyValue | Get Layout Property Value |
getLineStyles | Get Line Styles |
getNetworkCenter | Get Network Center |
getNetworkCount | Get the number of Cytoscape networks |
getNetworkList | Get the list of Cytoscape networks |
getNetworkName | Get the name of a network |
getNetworkNDExId | Get Network NDEx Id |
getNetworkProperty | Get Network Property Values |
getNetworkSuid | Get the SUID of a network |
getNetworkViews | Get Network Views |
getNetworkViewSuid | Get the SUID of a network view |
getNetworkZoom | Get Network Zoom |
getNodeAttribute | DEPRECATED: getNodeAttribute |
getNodeAttributeNames | DEPRECATED: getNodeAttributeNames |
getNodeAttributeNames_deprecated | DEPRECATED: getNodeAttributeNames |
getNodeAttribute_deprecated | DEPRECATED: getNodeAttribute |
getNodeColor | Get Node Color |
getNodeCount | Get Node Count |
getNodeHeight | Get Node Height |
getNodePosition | DEFUNCT: getNodePosition |
getNodePositiondefunct | DEFUNCT: getNodePosition |
getNodeProperty | Get Node Property Values |
getNodeSelectionColorDefault | Get Node Selection Color Default |
getNodeShapes | Get Node Shapes |
getNodeSize | Get Node Size |
getNodeWidth | Get Node Width |
getSelectedEdgeCount | Get Selected Edge Count |
getSelectedEdges | Get Selected Edges |
getSelectedNodeCount | Get Selected Node Count |
getSelectedNodes | Get Selected Nodes |
getStyleDependencies | Get the values of dependencies in a style |
getTableColumnNames | Get Table Column Names |
getTableColumns | Get table column values |
getTableColumnTypes | Get Table Column Types |
getTableValue | Get table cell value |
getUninstalledApps | List Uninstalled Apps |
getViewCoordinates | DEFUNCT: getViewCoordinates |
getViewCoordinatesdefunct | DEFUNCT: getViewCoordinates |
getVisualPropertyDefault | Get Visual Property Default |
getVisualPropertyNames | Get Visual Property Names |
getVisualStyleNames | Get Visual Style Names |
getWindowCount | DEPRECATED: getWindowCount |
getWindowCountdeprecated | DEPRECATED: getWindowCount |
getWindowID | DEPRECATED: getWindowID |
getWindowIDdeprecated | DEPRECATED: getWindowID |
getWindowList | DEPRECATED: getWindowList |
getWindowListdeprecated | DEPRECATED: getWindowList |
getZoom | DEPRECATED: getZoom |
getZoomdeprecated | DEPRECATED: getZoom |
hideAllPanels | Hide All Panels |
hideEdges | Hide Edges |
hideNodes | Hide Nodes |
hidePanel | Hide Panel |
hideSelectedEdges | Hide Selected Edges |
hideSelectedNodes | Hide Selected Nodes |
importNetworkFromFile | Import Network From File |
importNetworkFromNDEx | Import Network From NDEx |
initEdgeAttribute | DEFUNCT: initEdgeAttribute |
initEdgeAttributedefunct | DEFUNCT: initEdgeAttribute |
initNodeAttribute | DEFUNCT: initNodeAttribute |
initNodeAttributedefunct | DEFUNCT: initNodeAttribute |
installApp | Install App |
invertEdgeSelection | Invert Edge Selection |
invertNodeSelection | Invert Node Selection |
layoutCopycat | Copy a layout from one network to another |
layoutNetwork | Apply a layout to a network |
listGroups | List Groups |
loadTableData | Loads data into Cytoscape tables keyed by row |
lockNodeDimensions | Lock Node Dimensions |
makeRandomGraph | DEFUNCT: makeRandomGraph |
makeRandomGraphdefunct | DEFUNCT: makeRandomGraph |
makeSimpleGraph | Make Simple Graph |
makeSimpleIgraph | Make Simple Igraph |
mapTableColumn | Map Table Column |
mapVisualProperty | Creates a mapping between an attribute and a visual property |
matchArrowColorToEdge | Match Arrow Color To Edge |
noa | DEFUNCT: noa |
noa.names | DEFUNCT: noa.names |
noa.namesdefunct | DEFUNCT: noa.names |
noadefunct | DEFUNCT: noa |
openAppStore | Open App Store Page |
openSession | Open Session File or URL |
ping | DEPRECATED: ping |
ping_deprecated | DEPRECATED: ping |
pluginVersion | DEPRECATED: pluginVersion |
pluginVersiondeprecated | DEPRECATED: pluginVersion |
predictTimeToDisplayGraph | DEFUNCT: predictTimeToDisplayGraph |
predictTimeToDisplayGraphdefunct | DEFUNCT: predictTimeToDisplayGraph |
raiseWindow | DEFUNCT: raiseWindow |
raiseWindowdefunct | DEFUNCT: raiseWindow |
RCy3 | RCy3: Functions to Access and Control Cytoscape |
redraw | DEPRECATED: redraw |
redrawdeprecated | DEPRECATED: redraw |
RemoveFromGroup | Remove from Group |
renameCytoscapeNetwork | DEPRECATED: renameCytoscapeNetwork |
renameCytoscapeNetworkdeprecated | DEPRECATED: renameCytoscapeNetwork |
renameNetwork | Rename a network |
renameTableColumn | Rename Table Column |
restoreLayout | DEFUNCT: restoreLayout |
restoreLayoutdefunct | DEFUNCT: restoreLayout |
saveImage | DEPRECATED: saveImage |
saveImagedeprecated | DEPRECATED: saveImage |
saveLayout | DEFUNCT: saveLayout |
saveLayoutdefunct | DEFUNCT: saveLayout |
saveNetwork | DEPRECATED: saveNetwork |
saveNetwork_deprecated | DEPRECATED: saveNetwork |
saveSession | Save Session to File |
selectAllEdges | Select all edges |
selectAllNodes | Select all nodes |
selectEdges | Select Edges |
selectEdgesAdjacentToSelectedNodes | Select Edges Adjacent To Selected Nodes |
selectEdgesConnectedBySelectedNodes | DEPRECATED: selectEdgesConnectedBySelectedNodes |
selectEdgesConnectedBySelectedNodes_deprecated | DEPRECATED: selectEdgesConnectedBySelectedNodes |
selectEdgesConnectingSelectedNodes | Select the edges connecting selected nodes in Cytoscape Network |
selectFirstNeighbors | Select first neighbor nodes |
selectFirstNeighborsOfSelectedNodes | DEPRECATED: selectFirstNeighborsOfSelectedNodes |
selectFirstNeighborsOfSelectedNodesdeprecated | DEPRECATED: selectFirstNeighborsOfSelectedNodes |
selectNodes | Select Nodes |
sendEdges | DEFUNCT: sendEdges |
sendEdgesdefunct | DEFUNCT: sendEdges |
sendNodes | DEFUNCT: sendNodes |
sendNodesdefunct | DEFUNCT: sendNodes |
setBackgroundColorDefault | Set Background Color Default |
setCenter | DEPRECATED: setCenter |
setCenterdeprecated | DEPRECATED: setCenter |
setCommandProperties | DEFUNCT: setCommandProperties |
setCommandPropertiesdefunct | DEFUNCT: setCommandProperties |
setCurrentNetwork | Set current network |
setCurrentView | Set Current View |
setDefaultEdgeReverseSelectionColor | DEFUNCT: setDefaultEdgeReverseSelectionColor |
setDefaultEdgeReverseSelectionColordefunct | DEFUNCT: setDefaultEdgeReverseSelectionColor |
setDefaultNodeReverseSelectionColor | DEFUNCT: setDefaultNodeReverseSelectionColor |
setDefaultNodeReverseSelectionColordefunct | DEFUNCT: setDefaultNodeReverseSelectionColor |
setEdgeAttributes | DEFUNCT: setEdgeAttributes |
setEdgeAttributesdefunct | DEFUNCT: setEdgeAttributes |
setEdgeColorBypass | Set Edge Color Bypass |
setEdgeColorDefault | Set Edge Color Default |
setEdgeColorMapping | Set Edge Color Mapping |
setEdgeFontFaceBypass | Set Edge Font Face Bypass |
setEdgeFontSizeBypass | Set Edge Font Size Bypass |
setEdgeFontSizeDefault | Set Edge Font Size Default |
setEdgeLabelBypass | Set Edge Label Bypass |
setEdgeLabelColorBypass | Set Edge Label Color Bypass |
setEdgeLabelMapping | Set Edge Label Mapping |
setEdgeLabelOpacityBypass | Set Edge Label Opacity Bypass |
setEdgeLineStyleBypass | Set Edge Line Style Bypass |
setEdgeLineStyleDefault | Set Edge Line Style Default |
setEdgeLineStyleMapping | Set Edge Line Style Mapping |
setEdgeLineWidthBypass | Set Edge Line Width Bypass |
setEdgeLineWidthDefault | Set Edge Line Width Default |
setEdgeLineWidthMapping | Set Edge Line Width Mapping |
setEdgeOpacityBypass | Set Edge Opacity Bypass |
setEdgeOpacityMapping | Set Edge Opacity Mapping |
setEdgePropertyBypass | Set Edge Property Bypass |
setEdgeSelectionColorDefault | Set Edge Selection Color Default |
setEdgeSourceArrowColorBypass | Set Edge Source Arrow Color Bypass |
setEdgeSourceArrowColorDefault | Set Edge Source Arrow Color Default |
setEdgeSourceArrowColorMapping | Set Edge Source Arrow Color Mapping |
setEdgeSourceArrowMapping | Set Edge Source Arrow Mapping |
setEdgeSourceArrowShapeBypass | Set Edge Source Arrow Shape Bypass |
setEdgeSourceArrowShapeDefault | Set Edge Source Arrow Shape Default |
setEdgeTargetArrowColorBypass | Set Edge Target Arrow Color Bypass |
setEdgeTargetArrowColorDefault | Set Edge Target Arrow Color Default |
setEdgeTargetArrowColorMapping | Set Edge Target Arrow Color Mapping |
setEdgeTargetArrowMapping | Set Edge Target Arrow Mapping |
setEdgeTargetArrowShapeBypass | Set Edge Target Arrow Shape Bypass |
setEdgeTargetArrowShapeDefault | Set Edge Target Arrow Shape Default |
setEdgeTooltipBypass | Set Edge Tooltip Bypass |
setEdgeTooltipMapping | Set Edge Tooltip Mapping |
setGraph | DEFUNCT: setGraph |
setGraphdefunct | DEFUNCT: setGraph |
setLayoutProperties | Set Layout Properties |
setNetworkCenterBypass | Set Network Center Bypass |
setNetworkPropertyBypass | Set Network Property Bypass |
setNetworkZoomBypass | Set Network Zoom Bypass |
setNodeAttributes | DEFUNCT: setNodeAttributes |
setNodeAttributesdefunct | DEFUNCT: setNodeAttributes |
setNodeBorderColorBypass | Set Node Border Color Bypass |
setNodeBorderColorDefault | Set Node Border Color Default |
setNodeBorderColorMapping | Set Node Border Color Mapping |
setNodeBorderOpacityBypass | Set Node Border Opacity Bypass |
setNodeBorderWidthBypass | Set Node Border Width Bypass |
setNodeBorderWidthDefault | Set Node Border Width Default |
setNodeBorderWidthMapping | Set Node Border Width Mapping |
setNodeColorBypass | Set Node Color Bypass |
setNodeColorDefault | Set Node Color Default |
setNodeColorMapping | Set Node Color Mapping |
setNodeComboOpacityMapping | Set Node Combo Opacity Mapping |
setNodeFillOpacityBypass | Set Node Fill Opacity Bypass |
setNodeFontSizeBypass | Set Node Font Size Bypass |
setNodeFontSizeDefault | Set Node Font Size Default |
setNodeHeightBypass | Set Node Height Bypass |
setNodeLabelBypass | Set Node Label Bypass |
setNodeLabelColorBypass | Set Node Label Color Bypass |
setNodeLabelColorDefault | Set Node Label Color Default |
setNodeLabelMapping | Set Node Label Mapping |
setNodeLabelOpacityBypass | Set Node Label Opacity Bypass |
setNodeOpacityBypass | Set Node Opacity Bypass |
setNodePosition | DEFUNCT: setNodePosition |
setNodePositiondefunct | DEFUNCT: setNodePosition |
setNodePropertyBypass | Set Node Property Bypass |
setNodeSelectionColorDefault | Set Node Selection Color Default |
setNodeShapeBypass | Set Node Shape Bypass |
setNodeShapeDefault | Set Node Shape Default |
setNodeShapeMapping | Set Node Shape Mapping |
setNodeSizeBypass | Set Node Size Bypass |
setNodeSizeDefault | Set Node Size Default |
setNodeSizeMapping | Set Node Size Mapping |
setNodeTooltipMapping | Set Node Tooltip Mapping |
setNodeWidthBypass | Set Node Width Bypass |
setStyleDependencies | Set Style Dependencies |
setTooltipDismissDelay | DEFUNCT: setTooltipDismissDelay |
setTooltipDismissDelaydefunct | DEFUNCT: setTooltipDismissDelay |
setTooltipInitialDelay | DEFUNCT: setTooltipInitialDelay |
setTooltipInitialDelaydefunct | DEFUNCT: setTooltipInitialDelay |
setVisualPropertyDefault | Set Visual Property Default |
setVisualStyle | Set Visual Style |
setWindowSize | DEFUNCT: setWindowSize |
setWindowSizedefunct | DEFUNCT: setWindowSize |
setZoom | DEPRECATED: setZoom |
setZoom_deprecated | DEPRECATED: setZoom |
sfn | DEPRECATED: sfn |
sfndeprecated | DEPRECATED: sfn |
showGraphicsDetails | DEPRECATED: showGraphicsDetails |
showGraphicsDetails_deprecated | DEPRECATED: showGraphicsDetails |
syncNodeCustomGraphicsSize | Sync Node Custom Graphics Size |
toggleGraphicsDetails | Toggle Graphics Details |
unhideAll | Unhide All |
unhideEdges | Unhide Edges |
unhideNodes | Unhide Nodes |
uninstallApp | Uninstall App |
updateApp | Update App |
updateNetworkInNDEx | Update Network In NDEx |
updateStyleDefaults | Updates the default values of visual properties in a style |
updateStyleMapping | Updates a visual property mapping in a style |