Operating characteristics plus sample size and local fdr for microarray experiments


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Documentation for package ‘OCplus’ version 1.54.0

Help Pages

average.fdr Average a two-dimensional local false discovery rate
CDF Compute FDR for general scenarios
CDF.paired Compute FDR for general scenarios
CDFmix Compute FDR for general scenarios
CDFmix.paired Compute FDR for general scenarios
DrawContourlines Draw and label a set of pre-calculated isolines
EOC Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
FDR Compute FDR for general scenarios
FDR.paired Compute FDR for general scenarios
fdr1d Compute classical local false discovery rate
fdr2d Compute two-dimensional local false discovery rate
FDRp Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
MAsim Simulate two-sample microarray data
MAsim.real Simulate two-sample microarray data
MAsim.smyth Simulate two-sample microarray data
MAsim.var Simulate two-sample microarray data
OCshow Show one ore several OC curves graphically
p0 Display functions for local fdr output
PermNull Compute multiple parallel t-statistics
plot.FDR.result Plot the empirical FDR as a function of the cutoff level
plot.fdr1d.result Plot univariate local false discovery output
plot.fdr2d.result Plotting the bivariate local false discovery results
samplesize FDR as a function of sample size
smooth1d Smoothing a vector of counts
summary.fdr.result Display functions for local fdr output
tMixture Fit a mixture of t-distributions
TOC Theoretical FDR and sensitivity as a function of cutoff level
topDE Display functions for local fdr output
Tornadoplot Plotting the bivariate local false discovery results
tstatistics Compute multiple parallel t-statistics
Volcanoplot Plotting the bivariate local false discovery results