Addon to CellNOptR: Fuzzy Logic


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Documentation for package ‘CNORfuzzy’ version 1.22.0

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CNORfuzzy-package R version of CNOFuzzy, a Constrained Fuzzy Logic Network Optimisation
CNORfuzzy R version of CNOFuzzy, a Constrained Fuzzy Logic Network Optimisation
CNORwrapFuzzy CNORfuzzy analysis wrapper
compileMultiRes Compiles results from multiple runs and produces graph for choosing Post Refinement Threshold
computeScoreFuzzy Compute Score of a model compared to the data for a given intString.
defaultParametersFuzzy Create a list of default parameters
gaDiscreteT1 Genetic algorithm used to optimise a cFL model
getRefinedModel Refinement of Parameters of cFL model
interpretDiscreteGA Interpreter of output of discrete genetic algorithm
plotMeanFuzzyFit Simulates models returned from multiple cFL runs and plots mean fit to data
prep4simFuzzy Prepare a model for simulation
reduceFuzzy Remove unnecessary interactions from cFL model
simFuzzyT1 Simulation of a cFL model
writeFuzzyNetwork Despict the network results of training a cFL model to data in multiple runs.