shinyMethylData

DOI: 10.18129/B9.bioc.shinyMethylData    

Example dataset of input data for shinyMethyl

Bioconductor version: Release (3.6)

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethylData")

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Genome
Version	0.112.0
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	shinyMethyl
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyMethylData_0.112.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/shinyMethylData
Package Short Url	http://bioconductor.org/packages/shinyMethylData/
Package Downloads Report	Download Stats