gageData

DOI: 10.18129/B9.bioc.gageData    

Auxillary data for gage package

Bioconductor version: Release (3.6)

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gageData")

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	BreastCancerData, CancerData, ExperimentData, GEO, MicroarrayData, StemCell
Version	2.16.0
License	GPL (>=2.0)
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	gage, pathview, genefilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gage, ToPASeq
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gageData_2.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/gageData
Package Short Url	http://bioconductor.org/packages/gageData/
Package Downloads Report	Download Stats