TargetScoreData

DOI: 10.18129/B9.bioc.TargetScoreData    

TargetScoreData

Bioconductor version: Release (3.6)

Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TargetScoreData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetScoreData")

 

PDF	R Script	Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore
PDF		Reference Manual

Details

biocViews	ExperimentData, RNASeqData, miRNAData
Version	1.14.0
License	GPL-2
Depends
Imports
LinkingTo
Suggests	TargetScore, gplots
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	TargetScore
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TargetScoreData_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/TargetScoreData
Package Short Url	http://bioconductor.org/packages/TargetScoreData/
Package Downloads Report	Download Stats