RNAseqData.HNRNPC.bam.chr14

DOI: 10.18129/B9.bioc.RNAseqData.HNRNPC.bam.chr14    

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.6)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

Documentation

PDF		Reference Manual

Details

biocViews	ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version	0.16.0
License	LGPL
Depends
Imports
LinkingTo
Suggests	GenomicAlignments, BiocInstaller
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me	samExploreR
Imports Me
Suggests Me	BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RNAseqData.HNRNPC.bam.chr14_0.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url	http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report	Download Stats