RNAseqData.HNRNPC.bam.chr14

DOI: 10.18129/B9.bioc.RNAseqData.HNRNPC.bam.chr14    

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.6)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

Documentation

PDF   Reference Manual

Details

biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.16.0
License LGPL
Depends
Imports
LinkingTo
Suggests GenomicAlignments, BiocInstaller
SystemRequirements
Enhances
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me samExploreR
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAseqData.HNRNPC.bam.chr14_0.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
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