HelloRangesData

DOI: 10.18129/B9.bioc.HelloRangesData    

Data for the HelloRanges tutorial vignette

Bioconductor version: Release (3.6)

Provides the data that were used in the bedtools tutorial by Aaron Quinlan (http://quinlanlab.org/tutorials/bedtools/bedtools.html). Includes a subset of the DnaseI hypersensitivity data from "Maurano et al. Systematic Localization of Common Disease-Associated Variation in Regulatory DNA. Science. 2012. Vol. 337 no. 6099 pp. 1190-1195." The rest of the tracks were originally downloaded from the UCSC table browser. See the HelloRanges vignette for a port of the bedtools tutorial to R.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRangesData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HelloRangesData")

 

PDF	R Script	HelloRanges Example Data
PDF		Reference Manual

Details

biocViews	ExperimentData, SequencingData
Version	1.4.0
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	HelloRanges
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HelloRangesData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HelloRangesData
Package Short Url	http://bioconductor.org/packages/HelloRangesData/
Package Downloads Report	Download Stats