ConnectivityMap

DOI: 10.18129/B9.bioc.ConnectivityMap    

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Bioconductor version: Release (3.6)

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Author: Paul Shannon

Maintainer: Paul Shannon<pshannon at systemsbiology.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ConnectivityMap")

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, MicroarrayData
Version	1.14.0
License	GPL-3
Depends	R (>= 2.15.1)
Imports
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ConnectivityMap_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/ConnectivityMap
Package Short Url	http://bioconductor.org/packages/ConnectivityMap/
Package Downloads Report	Download Stats