ABAData

DOI: 10.18129/B9.bioc.ABAData    

Averaged gene expression in human brain regions from Allen Brain Atlas

Bioconductor version: Release (3.6)

Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

Author: Steffi Grote

Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABAData")

Documentation

HTML	R Script	ABAData: gene expression data to use with enrichment analysis package ABAEnrichment
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData
Version	1.8.0
License	GPL (>= 2)
Depends	R (>= 3.2)
Imports
LinkingTo
Suggests	BiocStyle, knitr, ABAEnrichment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	ABAEnrichment
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABAData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/ABAData
Package Short Url	http://bioconductor.org/packages/ABAData/
Package Downloads Report	Download Stats