targetscan.Mm.eg.db

DOI: 10.18129/B9.bioc.targetscan.Mm.eg.db    

TargetScan miRNA target predictions for mouse

Bioconductor version: Release (3.6)

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("targetscan.Mm.eg.db")

Documentation

PDF		Reference Manual
Text		LICENSE

Details

biocViews	AnnotationData, FunctionalAnnotation
Version	0.6.1
License	file LICENSE
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports	methods, AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MmPalateMiRNA

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	targetscan.Mm.eg.db_0.6.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/targetscan.Mm.eg.db/
Package Downloads Report	Download Stats