SNPlocs.Hsapiens.dbSNP149.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP149.GRCh38    

SNP locations for Homo sapiens (dbSNP Build 149)

Bioconductor version: Release (3.6)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages at fredhutch.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP149.GRCh38")

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.20
License	Artistic-2.0
Depends	BSgenome(>= 1.43.4)
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38/
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