The qcmetrics package is a framework that provides simple data containers for quality metrics and support for automatic report generation. This document briefly illustrates the core data structures and then demonstrates the generation and automation of quality control reports for microarray and proteomics data.
qcmetrics 1.16.0
The full vignette is available in pdf format on the qcmetrics Bioconductor landing page at
http://www.bioconductor.org/packages/devel/bioc/vignettes/qcmetrics/inst/doc/qcmetrics.pdf
## R version 3.4.2 (2017-09-28)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.3 LTS
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## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.6-bioc/R/lib/libRblas.so
## LAPACK: /home/biocbuild/bbs-3.6-bioc/R/lib/libRlapack.so
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## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
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## other attached packages:
## [1] BiocStyle_2.6.0
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## loaded via a namespace (and not attached):
## [1] compiler_3.4.2 backports_1.1.1 bookdown_0.5 magrittr_1.5
## [5] rprojroot_1.2 htmltools_0.3.6 tools_3.4.2 yaml_2.1.14
## [9] Rcpp_0.12.13 stringi_1.1.5 rmarkdown_1.6 knitr_1.17
## [13] stringr_1.2.0 digest_0.6.12 evaluate_0.10.1