Returns a data.table with one row per gene set. This data.table contains columns:

set
name of gene set
cond_Z
Z statistic for continuous component
cont_P
wald P value
cont_effect
difference in continuous regression coefficients between null and test sets (ie, the numerator of the Z-statistic.)
disc_Z
Z statistic for discrete
disc_P
wald P value
disc_effect
difference in discrete regression coefficients between null and test sets.
combined_Z
combined discrete and continuous Z statistic using Stouffer's method
combined_P
combined P value
combined_adj
FDR adjusted combined P value

# S4 method for GSEATests
summary(object, ...)

Arguments

object
A GSEATests object
...
passed to calcZ

Value

data.table

See also

gseaAfterBoot

Examples

## See the examples in gseaAfterBoot example(gseaAfterBoot)
#> Warning: no help found for ‘gseaAfterBoot’