vtpnet

DOI: 10.18129/B9.bioc.vtpnet    

variant-transcription factor-phenotype networks

Bioconductor version: Release (3.6)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF	R Script	vtpnet: variant-transcription factor-network tools
PDF		Reference Manual

Details

biocViews	Network, Software
Version	0.18.0
In Bioconductor since	BioC 2.13 (R-3.0) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
LinkingTo
Suggests	MotifDb, VariantAnnotation, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vtpnet_0.18.0.tar.gz
Windows Binary	vtpnet_0.18.0.zip
Mac OS X 10.11 (El Capitan)	vtpnet_0.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/vtpnet
Package Short Url	http://bioconductor.org/packages/vtpnet/
Package Downloads Report	Download Stats