traseR

DOI: 10.18129/B9.bioc.traseR    

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: Release (3.6)

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

 

PDF	R Script	Perform GWAS trait-associated SNP enrichment analyses in genomic intervals
PDF		Reference Manual

Details

biocViews	Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL
Depends	R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
LinkingTo
Suggests	BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	traseR_1.8.0.tar.gz
Windows Binary	traseR_1.8.0.zip
Mac OS X 10.11 (El Capitan)	traseR_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/traseR
Package Short Url	http://bioconductor.org/packages/traseR/
Package Downloads Report	Download Stats