survcomp

DOI: 10.18129/B9.bioc.survcomp    

Performance Assessment and Comparison for Survival Analysis

Bioconductor version: Release (3.6)

Assessment and Comparison for Performance of Risk Prediction (Survival) Models.

Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush, Samuel Branders, Zhaleh Safikhani

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>, Catharina Olsen <colsen at ulb.ac.be>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("survcomp")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survcomp")

 

PDF	R Script	SurvComp: a package for performance assessment and comparison for survival analysis
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Software, Visualization
Version	1.28.5
In Bioconductor since	BioC 2.8 (R-2.13) (7 years)
License	Artistic-2.0
Depends	survival, prodlim, R (>= 3.4)
Imports	ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta, stats, graphics
LinkingTo
Suggests	Hmisc, CPE, clinfun, xtable, Biobase
SystemRequirements
Enhances
URL	http://www.pmgenomics.ca/bhklab/
Depends On Me	genefu
Imports Me	GenRank
Suggests Me	breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, metaseqR
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	survcomp_1.28.5.tar.gz
Windows Binary	survcomp_1.28.5.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	survcomp_1.28.5.tgz
Source Repository	git clone https://git.bioconductor.org/packages/survcomp
Package Short Url	http://bioconductor.org/packages/survcomp/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive