DOI: 10.18129/B9.bioc.splatter    

Simple Simulation of Single-cell RNA Sequencing Data

Bioconductor version: Release (3.6)

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

Author: Luke Zappia

Maintainer: Luke Zappia <luke.zappia at mcri.edu.au>

Citation (from within R, enter citation("splatter")):


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HTML R Script An introduction to the Splatter package
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 1.2.2
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License GPL-3 + file LICENSE
Depends R (>= 3.4), scater, SingleCellExperiment
Imports akima, BiocGenerics, BiocParallel, checkmate, edgeR, fitdistrplus, ggplot2, locfit, matrixStats, methods, scales, stats, SummarizedExperiment, utils
Suggests BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress, pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa, phenopath, zinbwave, BASiCS
URL https://github.com/Oshlack/splatter
BugReports https://github.com/Oshlack/splatter/issues
Depends On Me
Imports Me
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Source Package splatter_1.2.2.tar.gz
Windows Binary splatter_1.2.2.zip
Mac OS X 10.11 (El Capitan) splatter_1.2.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/splatter
Package Short Url http://bioconductor.org/packages/splatter/
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Old Source Packages for BioC 3.6 Source Archive

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