DOI: 10.18129/B9.bioc.qpgraph    

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Bioconductor version: Release (3.6)

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

Author: Robert Castelo [aut, cre], Alberto Roverato [aut]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("qpgraph")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF BasicUsersGuide.pdf
PDF R Script Estimate eQTL networks using qpgraph
PDF R Script Reverse-engineer transcriptional regulatory networks using qpgraph
PDF R Script Simulating molecular regulatory networks using qpgraph
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, GeneRegulation, GeneticVariability, Genetics, GraphAndNetwork, Microarray, NetworkInference, Pathways, SNP, Software, Transcription
Version 2.12.0
In Bioconductor since BioC 2.4 (R-2.9) (9 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports methods, parallel, Matrix (>= 1.0), grid, annotate, graph(>= 1.45.1), Biobase, S4Vectors, BiocParallel, AnnotationDbi, IRanges, GenomeInfoDb, GenomicRanges, GenomicFeatures, mvtnorm, qtl, Rgraphviz
Suggests RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats
URL https://github.com/rcastelo/qpgraph
BugReports https://github.com/rcastelo/rcastelo/issues
Depends On Me
Imports Me clipper, ToPASeq
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qpgraph_2.12.0.tar.gz
Windows Binary qpgraph_2.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) qpgraph_2.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qpgraph
Package Short Url http://bioconductor.org/packages/qpgraph/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: