openPrimeRui

DOI: 10.18129/B9.bioc.openPrimeRui    

Shiny Application for Multiplex PCR Primer Design and Analysis

Bioconductor version: Release (3.6)

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]

Maintainer: Matthias Döring <mdoering at mpi-inf.mpg.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("openPrimeRui")

Documentation

HTML	R Script	openPrimeRui
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, Technology
Version	1.0.0
License	GPL-2
Depends	R (>= 3.4.0), openPrimeR(>= 0.99.0)
Imports	shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0)
LinkingTo
Suggests	knitr (>= 1.13)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	openPrimeRui_1.0.0.tar.gz
Windows Binary	openPrimeRui_1.0.0.zip
Mac OS X 10.11 (El Capitan)	openPrimeRui_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/openPrimeRui
Package Short Url	http://bioconductor.org/packages/openPrimeRui/
Package Downloads Report	Download Stats