nucleR

DOI: 10.18129/B9.bioc.nucleR    

Nucleosome positioning package for R

Bioconductor version: Release (3.6)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Ricard Illa <ricard.illa at irbbarcelona.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

 

PDF	R Script	nucleR
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	ChIPSeq, Genetics, Microarray, Sequencing, Software
Version	2.10.0
In Bioconductor since	BioC 2.9 (R-2.14) (6.5 years)
License	LGPL (>= 3)
Depends	ShortRead
Imports	methods, BiocGenerics, S4Vectors(>= 0.9.39), IRanges(>= 2.5.27), Biobase, GenomicRanges(>= 1.23.16), Rsamtools, stats, graphics, parallel
LinkingTo
Suggests	Starr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nucleR_2.10.0.tar.gz
Windows Binary	nucleR_2.10.0.zip
Mac OS X 10.11 (El Capitan)	nucleR_2.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nucleR
Package Short Url	http://bioconductor.org/packages/nucleR/
Package Downloads Report	Download Stats