netReg

DOI: 10.18129/B9.bioc.netReg    

Network-Regularized Regression Models

Bioconductor version: Release (3.6)

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the likelihood of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

Author: Simon Dirmeier [aut, cre]

Maintainer: Simon Dirmeier <simon.dirmeier at web.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netReg")

Documentation

HTML	R Script	netReg
PDF		Reference Manual
Text		NEWS

Details

biocViews	FeatureExtraction, GraphAndNetwork, Network, Regression, Software, StatisticalMethod
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	GPL-3
Depends	R (>= 3.4)
Imports	Rcpp, stats
LinkingTo	Rcpp, RcppArmadillo
Suggests	testthat, knitr, rmarkdown, BiocStyle, lintr, lassoshooting
SystemRequirements	C++11
Enhances
URL	https://github.com/dirmeier/netReg
BugReports	https://github.com/dirmeier/netReg/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netReg_1.2.0.tar.gz
Windows Binary	netReg_1.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	netReg_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netReg
Package Short Url	http://bioconductor.org/packages/netReg/
Package Downloads Report	Download Stats