mosaics

DOI: 10.18129/B9.bioc.mosaics    

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see jmosaic.

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Release (3.6)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")

 

PDF	R Script	MOSAiCS
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version	2.16.0
In Bioconductor since	BioC 2.8 (R-2.13) (7 years)
License	GPL (>= 2)
Depends	R (>= 3.0.0), methods, graphics, Rcpp
Imports	MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
LinkingTo	Rcpp
Suggests	mosaicsExample
SystemRequirements	Perl
Enhances	parallel
URL	http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mosaics_2.16.0.tar.gz
Windows Binary	mosaics_2.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	mosaics_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mosaics
Package Short Url	http://bioconductor.org/packages/mosaics/
Package Downloads Report	Download Stats