methylInheritance

DOI: 10.18129/B9.bioc.methylInheritance    

Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect

Bioconductor version: Release (3.6)

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Author: Astrid Deschênes, Pascal Belleau and Arnaud Droit

Maintainer: Astrid Deschenes <adeschen at hotmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methylInheritance")

Documentation

HTML	R Script	Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4)
Imports	methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus
LinkingTo
Suggests	BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
SystemRequirements
Enhances
URL	https://github.com/adeschen/methylInheritance
BugReports	https://github.com/adeschen/methylInheritance/issues
Depends On Me
Imports Me
Suggests Me	methInheritSim
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methylInheritance_1.2.0.tar.gz
Windows Binary	methylInheritance_1.2.0.zip
Mac OS X 10.11 (El Capitan)	methylInheritance_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methylInheritance
Package Short Url	http://bioconductor.org/packages/methylInheritance/
Package Downloads Report	Download Stats