methimpute

DOI: 10.18129/B9.bioc.methimpute    

Imputation-guided re-construction of complete methylomes from WGBS data

Bioconductor version: Release (3.6)

This package implements functions for calling methylated and unmethylated regions and estimate variability among a population of samples.

Author: Aaron Taudt

Maintainer: Aaron Taudt <aaron.taudt at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methimpute")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methimpute")

 

PDF	R Script	Methylation status calling with METHimpute
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, Sequencing, Software
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 3.4.0), GenomicRanges, ggplot2
Imports	Rcpp (>= 0.12.4.5), methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm
LinkingTo	Rcpp
Suggests	knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methimpute_1.0.0.tar.gz
Windows Binary	methimpute_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	methimpute_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methimpute
Package Short Url	http://bioconductor.org/packages/methimpute/
Package Downloads Report	Download Stats