DOI: 10.18129/B9.bioc.metagenomeFeatures    

Exploration of marker-gene sequence taxonomic annotations

Bioconductor version: Release (3.6)

metagenomeFeatures was developed for use in exploring the taxonomic annotations for a marker-gene metagenomic sequence dataset. The package can be used to explore the taxonomic composition of a marker-gene database or annotated sequences from a marker-gene metagenome experiment.

Author: Nathan D. Olson, Joseph Nathaniel Paulson, Hector Corrada Bravo

Maintainer: Nathan D. Olson <nolson at>

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biocViews Annotation, Infrastructure, Metagenomics, Microbiome, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase(>= 2.17.8)
Imports Biostrings(>= 2.36.4), ShortRead(>= 1.26.0), dplyr (>= 0.7.0), dbplyr (>= 1.0.0), stringr (>= 1.0.0), lazyeval (>= 0.1.10), RSQLite (>= 1.0.0), magrittr (>= 1.5), methods (>= 3.3.1), lattice (>= 0.20.33), metagenomeSeq(>= 1.14.2), ape (>= 3.5), purrr (>= 0.2.2)
Suggests knitr (>= 1.11), msd16s(>= 0.102.0), testthat (>= 0.10.0), rmarkdown (>= 1.3)
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Imports Me greengenes13.5MgDb
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