manta

DOI: 10.18129/B9.bioc.manta    

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: Release (3.6)

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("manta")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("manta")

 

PDF	R Script	manta
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, DifferentialExpression, GeneExpression, Genetics, QualityControl, RNASeq, Sequencing, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 2.10 (R-2.15) (6 years)
License	Artistic-2.0
Depends	R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports	Hmisc, caroline (>= 0.6.6)
LinkingTo
Suggests	RSQLite, plotrix
SystemRequirements
Enhances
URL	http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	manta_1.24.0.tar.gz
Windows Binary	manta_1.24.0.zip
Mac OS X 10.11 (El Capitan)	manta_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/manta
Package Short Url	http://bioconductor.org/packages/manta/
Package Downloads Report	Download Stats