mQTL.NMR

DOI: 10.18129/B9.bioc.mQTL.NMR    

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Bioconductor version: Release (3.6)

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mQTL.NMR")

 

PDF	R Script	Frequently Asked Questions
PDF	R Script	How to use the mQTL.NMR package
PDF		Reference Manual

Details

biocViews	Cheminformatics, Genetics, Metabolomics, SNP, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	Artistic-2.0
Depends	R (>= 2.15.0)
Imports	qtl, GenABEL, MASS, outliers, graphics, stats, utils
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL	http://www.ican-institute.org/tools/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mQTL.NMR_1.12.0.tar.gz
Windows Binary	mQTL.NMR_1.12.0.zip
Mac OS X 10.11 (El Capitan)	mQTL.NMR_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mQTL.NMR
Package Short Url	http://bioconductor.org/packages/mQTL.NMR/
Package Downloads Report	Download Stats