logicFS

DOI: 10.18129/B9.bioc.logicFS    

Identification of SNP Interactions

Bioconductor version: Release (3.6)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("logicFS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")

 

PDF R Script logicFS Manual
PDF   Reference Manual

Details

biocViews Classification, Genetics, SNP, Software
Version 1.48.0
In Bioconductor since BioC 1.8 (R-2.3) (12 years)
License LGPL (>= 2)
Depends LogicReg, mcbiopi
Imports
LinkingTo
Suggests genefilter, siggenes
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me trio
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logicFS_1.48.0.tar.gz
Windows Binary logicFS_1.48.0.zip
Mac OS X 10.11 (El Capitan) logicFS_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logicFS
Package Short Url http://bioconductor.org/packages/logicFS/
Package Downloads Report Download Stats

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