illuminaio

DOI: 10.18129/B9.bioc.illuminaio    

Parsing Illumina Microarray Output Files

Bioconductor version: Release (3.6)

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("illuminaio")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")

 

PDF		Description of Encrypted IDAT Format
PDF	R Script	Introduction to illuminaio
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version	0.20.0
In Bioconductor since	BioC 2.12 (R-3.0) (5 years)
License	GPL-2
Depends
Imports	base64
LinkingTo
Suggests	RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle
SystemRequirements
Enhances
URL	https://github.com/HenrikBengtsson/illuminaio
BugReports	https://github.com/HenrikBengtsson/illuminaio/issues
Depends On Me	normalize450K, RnBeads, wateRmelon
Imports Me	beadarray, ChAMP, crlmm, methylumi, minfi
Suggests Me	limma
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	illuminaio_0.20.0.tar.gz
Windows Binary	illuminaio_0.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	illuminaio_0.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/illuminaio
Package Short Url	http://bioconductor.org/packages/illuminaio/
Package Downloads Report	Download Stats