flowDensity

DOI: 10.18129/B9.bioc.flowDensity    

Sequential Flow Cytometry Data Gating

Bioconductor version: Release (3.6)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowDensity")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

 

PDF	R Script	Automated alternative to the current manual gating practice
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Bioinformatics, Cancer, CellBiology, Clustering, DensityGating, FlowCytData, FlowCytometry, Software, StemCells
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	Artistic-2.0
Depends	R (>= 2.10.0), methods
Imports	flowCore, graphics, car, sp, rgeos, gplots, RFOC, GEOmap, flowWorkspace(>= 3.21.5), methods, grDevices
LinkingTo
Suggests
SystemRequirements	GEOS (>= 3.2.0);for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX.
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowDensity_1.12.0.tar.gz
Windows Binary	flowDensity_1.12.0.zip
Mac OS X 10.11 (El Capitan)	flowDensity_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowDensity
Package Short Url	http://bioconductor.org/packages/flowDensity/
Package Downloads Report	Download Stats