flowAI

DOI: 10.18129/B9.bioc.flowAI    

Automatic and interactive quality control for flow cytometry data

Bioconductor version: Release (3.6)

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <gianni.monaco at unibas.ch>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowAI")

Documentation

HTML	R Script	Automatic and GUI methods to do quality control on Flow cytometry Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, FlowCytometry, QualityControl, Software
Version	1.6.3
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils
LinkingTo
Suggests	testthat, shiny, rmarkdown, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowAI_1.6.3.tar.gz
Windows Binary	flowAI_1.6.3.zip
Mac OS X 10.11 (El Capitan)	flowAI_1.6.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowAI
Package Short Url	http://bioconductor.org/packages/flowAI/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive