fCI

DOI: 10.18129/B9.bioc.fCI    

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: Release (3.6)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("fCI")

Documentation

HTML	R Script	fCI
PDF		Reference Manual

Details

biocViews	Proteomics, Software
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fCI_1.8.0.tar.gz
Windows Binary	fCI_1.8.0.zip
Mac OS X 10.11 (El Capitan)	fCI_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fCI
Package Short Url	http://bioconductor.org/packages/fCI/
Package Downloads Report	Download Stats