chromPlot

DOI: 10.18129/B9.bioc.chromPlot    

Global visualization tool of genomic data

Bioconductor version: Release (3.6)

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromPlot")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")

 

PDF	R Script	General Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	GPL (>= 2)
Depends	stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
LinkingTo
Suggests	qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chromPlot_1.6.0.tar.gz
Windows Binary	chromPlot_1.6.0.zip
Mac OS X 10.11 (El Capitan)	chromPlot_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chromPlot
Package Short Url	http://bioconductor.org/packages/chromPlot/
Package Downloads Report	Download Stats