bioassayR

DOI: 10.18129/B9.bioc.bioassayR    

Cross-target analysis of small molecule bioactivity

Bioconductor version: Release (3.6)

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

Author: Tyler Backman, Ronly Schlenk, Thomas Girke

Maintainer: Tyler Backman <tbackman at lbl.gov>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bioassayR")

Documentation

HTML	R Script	Introduction and Examples
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Proteomics, Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 2.13 (R-3.0) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.1.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods, Matrix, rjson, BiocGenerics(>= 0.13.8)
Imports	XML, ChemmineR
LinkingTo
Suggests	BiocStyle, RCurl, biomaRt, cellHTS2, knitr, knitcitations, knitrBootstrap, testthat, ggplot2, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/TylerBackman/bioassayR
BugReports	https://github.com/TylerBackman/bioassayR/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bioassayR_1.16.0.tar.gz
Windows Binary	bioassayR_1.16.0.zip
Mac OS X 10.11 (El Capitan)	bioassayR_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bioassayR
Package Short Url	http://bioconductor.org/packages/bioassayR/
Package Downloads Report	Download Stats