bigmelon

DOI: 10.18129/B9.bioc.bigmelon    

Illumina methylation array analysis for large experiments

Bioconductor version: Release (3.6)

Methods for working with Illumina arrays using gdsfmt.

Author: Tyler J. Gorrie-Stone [cre, aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [aut]

Maintainer: Tyler J. Gorrie-Stone <tgorri at essex.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bigmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bigmelon")

 

PDF	R Script	The bigmelon Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.4.0
In Bioconductor since	BioC 3.4 (R-3.3) (1.5 years)
License	GPL-3
Depends	R (>= 3.3), wateRmelon(>= 1.19.1), gdsfmt(>= 1.0.4), methods, methylumi, minfi(>= 1.21.0), Biobase
Imports	stats, utils, GEOquery, graphics
LinkingTo
Suggests	BiocGenerics, BiocStyle, minfiData, parallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bigmelon_1.4.0.tar.gz
Windows Binary	bigmelon_1.4.0.zip
Mac OS X 10.11 (El Capitan)	bigmelon_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bigmelon
Package Short Url	http://bioconductor.org/packages/bigmelon/
Package Downloads Report	Download Stats