apeglm

DOI: 10.18129/B9.bioc.apeglm    

Approximate posterior estimation for GLM coefficients

Bioconductor version: Release (3.6)

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Author: Anqi Zhu, Joseph G. Ibrahim, Michael I. Love

Maintainer: Anqi Zhu <anqizhu at live.unc.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("apeglm")

Documentation

HTML	R Script	Effect size estimation with apeglm
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bayesian, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version	1.0.3
License	GPL-2
Depends
Imports	emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils
LinkingTo
Suggests	DESeq2, airway, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	DESeq2
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	apeglm_1.0.3.tar.gz
Windows Binary	apeglm_1.0.3.zip
Mac OS X 10.11 (El Capitan)	apeglm_1.0.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/apeglm
Package Short Url	http://bioconductor.org/packages/apeglm/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive