affycoretools

DOI: 10.18129/B9.bioc.affycoretools    

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: Release (3.6)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affycoretools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycoretools")

 

PDF	R Script	affycoretools, refactored
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version	1.50.6
In Bioconductor since	BioC 1.8 (R-2.3) (12 years)
License	Artistic-2.0
Depends	Biobase, methods
Imports	affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI
LinkingTo
Suggests	affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl
SystemRequirements
Enhances
URL
Depends On Me	AgiMicroRna
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affycoretools_1.50.6.tar.gz
Windows Binary	affycoretools_1.50.6.zip
Mac OS X 10.11 (El Capitan)	affycoretools_1.50.6.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affycoretools
Package Short Url	http://bioconductor.org/packages/affycoretools/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive