affyQCReport

DOI: 10.18129/B9.bioc.affyQCReport    

QC Report Generation for affyBatch objects

Bioconductor version: Release (3.6)

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affyQCReport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyQCReport")

 

PDF	R Script	affyQCReport: Methods for Generating Affymetrix QC Reports
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Software
Version	1.56.0
In Bioconductor since	BioC 1.7 (R-2.2) (12.5 years)
License	LGPL (>= 2)
Depends	Biobase(>= 1.13.16), affy, lattice
Imports	affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests	tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BiocCaseStudies
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyQCReport_1.56.0.tar.gz
Windows Binary	affyQCReport_1.56.0.zip
Mac OS X 10.11 (El Capitan)	affyQCReport_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyQCReport
Package Short Url	http://bioconductor.org/packages/affyQCReport/
Package Downloads Report	Download Stats