TPP

DOI: 10.18129/B9.bioc.TPP    

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: Release (3.6)

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TPP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

 

PDF	R Script	TPP_introduction_1D
PDF	R Script	TPP_introduction_2D
PDF	R Script	TPP_introduction_NPARC
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	3.6.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	Artistic-2.0
Depends	R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports	biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
LinkingTo
Suggests	BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TPP_3.6.0.tar.gz
Windows Binary	TPP_3.6.0.zip
Mac OS X 10.11 (El Capitan)	TPP_3.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP
Package Short Url	http://bioconductor.org/packages/TPP/
Package Downloads Report	Download Stats