DOI: 10.18129/B9.bioc.SWATH2stats    

Transform and Filter SWATH Data for Statistical Packages

Bioconductor version: Release (3.6)

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

Author: Peter Blattmann, Moritz Heusel and Ruedi Aebersold

Maintainer: Peter Blattmann <blattmann at imsb.biol.ethz.ch>

Citation (from within R, enter citation("SWATH2stats")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


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PDF R Script SWATH2stats example script
PDF R Script SWATH2stats package Vignette
PDF   Reference Manual
Text   NEWS


biocViews Annotation, ExperimentalDesign, MassSpectrometry, Preprocessing, Proteomics, Software
Version 1.8.1
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License GPL-3
Depends R (>= 2.10.0)
Imports data.table, reshape2, grid, ggplot2, stats, grDevices, graphics, utils
Suggests testthat, aLFQ, knitr, PECA
Enhances imsbInfer, MSstats
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SWATH2stats_1.8.1.tar.gz
Windows Binary SWATH2stats_1.8.1.zip
Mac OS X 10.11 (El Capitan) SWATH2stats_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/SWATH2stats
Package Short Url http://bioconductor.org/packages/SWATH2stats/
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Old Source Packages for BioC 3.6 Source Archive

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