Rbowtie2

DOI: 10.18129/B9.bioc.Rbowtie2    

An R Wrapper for Bowtie2 and AdapterRemoval

Bioconductor version: Release (3.6)

This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.

Author: Zheng Wei, Wei Zhang

Maintainer: Zheng Wei <wzweizheng at qq.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie2")

Documentation

HTML	R Script	An Introduction to Rbowtie2
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Preprocessing, Sequencing, Software
Version	1.0.2
License	GPL (>= 3)
Depends	R (>= 3.4)
Imports
LinkingTo
Suggests	knitr
SystemRequirements	C++11
Enhances
URL	https://github.com/wzthu/Rbowtie2
BugReports	https://github.com/wzthu/Rbowtie2/issues
Depends On Me
Imports Me	esATAC
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rbowtie2_1.0.2.tar.gz
Windows Binary	Rbowtie2_1.0.2.zip (64-bit only)
Mac OS X 10.11 (El Capitan)	Rbowtie2_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rbowtie2
Package Short Url	http://bioconductor.org/packages/Rbowtie2/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive