Polyfit

DOI: 10.18129/B9.bioc.Polyfit    

Add-on to DESeq to improve p-values and q-values

Bioconductor version: Release (3.6)

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

Author: Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Polyfit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Polyfit")

 

PDF	R Script	Polyfit
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL (>= 3)
Depends	DESeq
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Polyfit_1.12.0.tar.gz
Windows Binary	Polyfit_1.12.0.zip
Mac OS X 10.11 (El Capitan)	Polyfit_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Polyfit
Package Short Url	http://bioconductor.org/packages/Polyfit/
Package Downloads Report	Download Stats