PROPS

DOI: 10.18129/B9.bioc.PROPS    

PRObabilistic Pathway Score (PROPS)

Bioconductor version: Release (3.6)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PROPS")

Documentation

HTML	R Script	PRObabilistic Pathway Scores (PROPS)
PDF		Reference Manual

Details

biocViews	Bayesian, Classification, GeneExpression, Software
Version	1.0.0
License	GPL-2
Depends
Imports	bnlearn, reshape2, sva, stats, utils, Biobase
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPS_1.0.0.tar.gz
Windows Binary	PROPS_1.0.0.zip
Mac OS X 10.11 (El Capitan)	PROPS_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPS
Package Short Url	http://bioconductor.org/packages/PROPS/
Package Downloads Report	Download Stats