OrderedList

DOI: 10.18129/B9.bioc.OrderedList    

Similarities of Ordered Gene Lists

Bioconductor version: Release (3.6)

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OrderedList")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OrderedList")

 

PDF	R Script	Similarities of Ordered Gene Lists
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.50.0
In Bioconductor since	BioC 1.8 (R-2.3) (12 years)
License	GPL (>= 2)
Depends	R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports	Biobase, graphics, methods, stats, twilight
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SystemRequirements
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URL	http://compdiag.molgen.mpg.de/software/index.shtml
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OrderedList_1.50.0.tar.gz
Windows Binary	OrderedList_1.50.0.zip
Mac OS X 10.11 (El Capitan)	OrderedList_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OrderedList
Package Short Url	http://bioconductor.org/packages/OrderedList/
Package Downloads Report	Download Stats