OperaMate

DOI: 10.18129/B9.bioc.OperaMate    

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Bioconductor version: Release (3.6)

OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.

Author: Chenglin Liu

Maintainer: Chenglin Liu <cliu at sjtu.edu.cn>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OperaMate")

 

PDF	R Script	An introduction to OperaMate
PDF		OperaMate-manual.pdf
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Normalization, Preprocessing, QualityControl, Software
Version	1.9.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL (>= 3)
Depends	R (>= 3.2.0), stats, methods, grDevices
Imports	pheatmap, grid, ggplot2, fBasics, gProfileR, gridExtra, reshape2, stabledist
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OperaMate_1.9.0.tar.gz
Windows Binary	OperaMate_1.9.0.zip
Mac OS X 10.11 (El Capitan)	OperaMate_1.9.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OperaMate
Package Short Url	http://bioconductor.org/packages/OperaMate/
Package Downloads Report	Download Stats